The silent protest began in Imam Khomeini Square in front of the forbidding Ministry of Telecommunications, which was busy cutting off cellphones but powerless to stop the murmured rage coursing through Tehran. Six days had passed since Iran’s disputed June 12 election, but the fury that brought three million people onto the streets the previous Monday showed no sign of abating. “Silence will win against bullets,” a woman beside me whispered. Her name was Zahra. She wore a green headband — the color adopted by the campaign of the defeated reformist candidate Mir Hussein Moussavi — and she held a banner saying, “This land is my land.” The words captured the popular conviction that not only had President Mahmoud Ahmadinejad stolen votes, but he also had made off with Iran’s dignity. Slowly the vast crowd began to move north. No chant issued from the throng, only distilled indignation. A young man asked me where I was from. When I told him New York, he shot back: “Give our regards to freedom. It’s coming right here!”

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In those giddy postelectoral days, anything seemed possible, even the arrival of liberty, or at least more of it, in the 30-year-old Islamic Republic. Through the swirl of events — the huge crowds, the beatings and the sirens, the tear gas and black smoke — the core issues were simple. Iranians felt cheated. They wanted their votes to count. They knew that no genuine victor with two-thirds of the vote need resort to brutality or fear a recount. Sometimes they asked me if the United Nations would help them; often they asked if America would. It was their way of saying, with fierce emotion, that the morality of the Iranian story, its right and wrong, was plain.

But it was precisely emotion, and notions of good and evil, that the Obama administration had spent the previous months trying to drain from the charged U.S.-Iranian relationship. Sobriety dominated the ideas of the president’s Iran team, as I’d learned before I left in conversations with senior officials at the State Department and the National Security Council. The Bush administration’s ideologically driven axis-of-evil approach to Iran had failed. Tehran had prospered by expanding its regional influence and was accelerating its nuclear program. The Obama administration believed it was time to seek normalization through a new, cooler look at a nation critical to U.S. strategic interests — from advancing Israeli-Arab peace negotiations to a successful withdrawal from Iraq.

“Who they select as leader in Iran is their prerogative, and there’s nothing we can do to control that,” Ray Takeyh, an Iranian-born adviser to Dennis Ross, the veteran Mideast negotiator who has been working on Iran for the Obama administration, told me before the election. “We’re trying to deal with Iran as an entity, a state, rather than privileging one faction or another. We want to inject a degree of rationality into this relationship, reduce it to two nations with some differences and some common interests — get beyond the incendiary rhetoric.” Takeyh’s words reminded me of Ross, who in his book “Statecraft” defined the term’s first principles as, “Have clear objectives, tailor them to fit reality.”

But now, as the crowd streaming before me demonstrated, Iran’s reality had changed. In his inaugural address, President Obama said: “To those who cling to power through corruption and deceit and the silencing of dissent, know that you are on the wrong side of history, but that we will extend a hand if you are willing to unclench your fist.” Seldom had a fist been clenched more unequivocally, dissent silenced more harshly or deceit practiced with more brazenness than in Iran after June 12.